Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SH-SY5Y
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SH-SY5Y
cell organism
human
cell description
neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA-2
antibody antibodydescription
Rabbit polyclonal. Antibody Target: GATA2
antibody targetdescription
GATA binding protein 2
antibody vendorname
Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid
GATA-2
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001783
replicate
1

Sequenced DNA Library

library_name
GSM935589: USC_ChipSeq_SH-SY5Y_GATA-2_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
81426282
Reads aligned (%)
73.2
Duplicates removed (%)
15.2
Number of peaks
44335 (qval < 1E-05)

hg38

Number of total reads
81426282
Reads aligned (%)
74.5
Duplicates removed (%)
14.3
Number of peaks
44501 (qval < 1E-05)

Base call quality data from DBCLS SRA