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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GATA2
wikigenes
PDBj
CellType: SK-N-SH
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150668
GSM935589: USC ChipSeq SH-SY5Y GATA-2 UCDavis
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA2
Cell type
Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
SH-SY5Y
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SH-SY5Y
cell organism
human
cell description
neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA-2
antibody antibodydescription
Rabbit polyclonal. Antibody Target: GATA2
antibody targetdescription
GATA binding protein 2
antibody vendorname
Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid
GATA-2
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001783
replicate
1
Sequenced DNA Library
library_name
GSM935589: USC_ChipSeq_SH-SY5Y_GATA-2_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
81426282
Reads aligned (%)
86.9
Duplicates removed (%)
14.3
Number of peaks
44501 (qval < 1E-05)
hg19
Number of total reads
81426282
Reads aligned (%)
86.3
Duplicates removed (%)
15.2
Number of peaks
44335 (qval < 1E-05)
Base call quality data from
DBCLS SRA