SRX150665
GSM935586: USC ChipSeq HEK293 Input UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
biomaterial_provider
ATCC
biomaterial_type
immortalized cell line
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
line
HEK293
cell organism
human
cell description
embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001777

Sequenced DNA Library

library_name
GSM935586: USC_ChipSeq_HEK293_Input_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30898350
Reads aligned (%)
86.1
Duplicates removed (%)
7.2
Number of peaks
623 (qval < 1E-05)

hg19

Number of total reads
30898350
Reads aligned (%)
85.3
Duplicates removed (%)
8.2
Number of peaks
918 (qval < 1E-05)

Base call quality data from DBCLS SRA