Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TBL1XR1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TBLR1_(ab24550)
antibody antibodydescription
Rabbit polyclonal, immunogen: Recombinant full length protein (Human). Antibody Target: TBLR1
antibody targetdescription
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation
antibody vendorname
Abcam
antibody vendorid
ab24550
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
replicate
1

Sequenced DNA Library

library_name
GSM935575: Stanford_ChipSeq_K562_TBLR1_(ab24550)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
57610035
Reads aligned (%)
91.3
Duplicates removed (%)
4.6
Number of peaks
4821 (qval < 1E-05)

hg38

Number of total reads
57610035
Reads aligned (%)
93.5
Duplicates removed (%)
3.1
Number of peaks
4987 (qval < 1E-05)

Base call quality data from DBCLS SRA