Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SH-SY5Y
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SH-SY5Y
cell organism
human
cell description
neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA3_(SC-269)
antibody antibodydescription
Mouse monoclonal IgG raised against human recombinant GATA-3 (amino acids 1-264). Antibody Target: GATA3
antibody targetdescription
This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-269
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001783
replicate
1

Sequenced DNA Library

library_name
GSM935567: USC_ChipSeq_SH-SY5Y_GATA3_(SC-269)_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
68614353
Reads aligned (%)
74.0
Duplicates removed (%)
24.2
Number of peaks
15503 (qval < 1E-05)

hg38

Number of total reads
68614353
Reads aligned (%)
75.7
Duplicates removed (%)
23.0
Number of peaks
15525 (qval < 1E-05)

Base call quality data from DBCLS SRA