Antigen

Antigen Class

TFs and others

Antigen

EP300

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

p300_(SC-584)

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

antibody targetdescription

Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-584

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

replicate

1

Sequenced DNA Library

library_name

GSM935562: Stanford_ChipSeq_GM12878_p300_(SC-584)_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

39761058

Reads aligned (%)

98.1

Duplicates removed (%)

3.5

Number of peaks

24714 (qval < 1E-05)

hg19

Number of total reads

39761058

Reads aligned (%)

97.2

Duplicates removed (%)

4.6

Number of peaks

25308 (qval < 1E-05)