Antigen

Antigen Class

TFs and others

Antigen

RFX5

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HeLa-S3

cell organism

human

cell description

cervical carcinoma

cell karyotype

cancer

cell lineage

ectoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

RFX5_(200-401-194)

antibody antibodydescription

Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

antibody targetdescription

Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

antibody vendorname

Rockland Immunochemicals

antibody vendorid

200-401-194

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000744

replicate

1

Sequenced DNA Library

library_name

GSM935560: Stanford_ChipSeq_HeLa-S3_RFX5_(200-401-194)_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

67477197

Reads aligned (%)

74.4

Duplicates removed (%)

8.6

Number of peaks

38257 (qval < 1E-05)

hg19

Number of total reads

67477197

Reads aligned (%)

73.9

Duplicates removed (%)

9.5

Number of peaks

38034 (qval < 1E-05)