Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PRDM1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
PRDM1_(9115)
antibody antibodydescription
Rabbit Monoclonal antibody against a synthetic peptide corresponding to residues surrounding Val90 of human PRDI-BF1. Antibody Target: PRDM1
antibody targetdescription
Transcriptional repressor that binds specifically to the PRDI element in the promoter of the beta-interferon gene. Drives the maturation of B-lymphocytes into Ig secreting cells.
antibody vendorname
Cell Signaling Technology
antibody vendorid
9115
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000744
replicate
1

Sequenced DNA Library

library_name
GSM935555: Stanford_ChipSeq_HeLa-S3_PRDM1_(9115)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
60004465
Reads aligned (%)
65.7
Duplicates removed (%)
12.4
Number of peaks
5537 (qval < 1E-05)

hg38

Number of total reads
60004465
Reads aligned (%)
67.2
Duplicates removed (%)
11.2
Number of peaks
5537 (qval < 1E-05)

Base call quality data from DBCLS SRA