Antigen

Antigen Class

TFs and others

Antigen

PRDM1

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HeLa-S3

cell organism

human

cell description

cervical carcinoma

cell karyotype

cancer

cell lineage

ectoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

PRDM1_(9115)

antibody antibodydescription

Rabbit Monoclonal antibody against a synthetic peptide corresponding to residues surrounding Val90 of human PRDI-BF1. Antibody Target: PRDM1

antibody targetdescription

Transcriptional repressor that binds specifically to the PRDI element in the promoter of the beta-interferon gene. Drives the maturation of B-lymphocytes into Ig secreting cells.

antibody vendorname

Cell Signaling Technology

antibody vendorid

9115

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000744

replicate

1

Sequenced DNA Library

library_name

GSM935555: Stanford_ChipSeq_HeLa-S3_PRDM1_(9115)_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

60004465

Reads aligned (%)

75.6

Duplicates removed (%)

11.2

Number of peaks

5537 (qval < 1E-05)

hg19

Number of total reads

60004465

Reads aligned (%)

75.0

Duplicates removed (%)

12.4

Number of peaks

5537 (qval < 1E-05)