Antigen

Antigen Class

TFs and others

Antigen

GTF2F1

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HeLa-S3

cell organism

human

cell description

cervical carcinoma

cell karyotype

cancer

cell lineage

ectoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

GTF2F1_(AB28179)

antibody antibodydescription

Rabbit polyclonal to TFIIF - Recombinant full length protein - RAP 74 subunit of TF11F. Antibody Target: GTF2F1

antibody targetdescription

RNA polymerase II transcription factor TFIIF is a heterodimer with 2 subunits: one, referred to as RAP74. TFIIF appears to assist TFIIB in recruiting RNA polymerase II into a preinitiation complex. It also affects RNA transcription by suppressing transient pausing of the polymerase at locations on the DNA template.

antibody vendorname

Abcam

antibody vendorid

ab28179

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000744

replicate

1

Sequenced DNA Library

library_name

GSM935554: Stanford_ChipSeq_HeLa-S3_GTF2F1_(AB28179)_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

60397010

Reads aligned (%)

68.3

Duplicates removed (%)

3.9

Number of peaks

20475 (qval < 1E-05)

hg19

Number of total reads

60397010

Reads aligned (%)

67.8

Duplicates removed (%)

5.0

Number of peaks

20170 (qval < 1E-05)