Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
Naked_DNA
control description
Control signal from Naked DNA.
control
Naked_DNA
control description
Control signal from Naked DNA.
controlid
wgEncodeEH000636
labversion
remapped from hg18
replicate
1

Sequenced DNA Library

library_name
GSM935538: Yale_ChipSeq_HeLa-S3_Input_Naked_DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
37665018
Reads aligned (%)
91.2
Duplicates removed (%)
4.0
Number of peaks
1173 (qval < 1E-05)

hg19

Number of total reads
37665018
Reads aligned (%)
90.4
Duplicates removed (%)
4.9
Number of peaks
1362 (qval < 1E-05)

Base call quality data from DBCLS SRA