Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
GM18526
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM18526
biomaterial_provider
Coriell
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM18526
cell organism
human
cell description
lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
controlid
wgEncodeEH000732
labversion
Illumina 2.0, low confidence sequences excluded
replicate
1

Sequenced DNA Library

library_name
GSM935525: Stanford_ChipSeq_GM18526_Input_IgG-mus
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
33039817
Reads aligned (%)
93.5
Duplicates removed (%)
3.2
Number of peaks
799 (qval < 1E-05)

hg19

Number of total reads
33039817
Reads aligned (%)
91.9
Duplicates removed (%)
3.9
Number of peaks
1146 (qval < 1E-05)

Base call quality data from DBCLS SRA