Antigen

Antigen Class

TFs and others

Antigen

JUN

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

K562

cell organism

human

cell description

leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC

cell karyotype

cancer

cell lineage

mesoderm

cell sex

F

treatment

IFNa30

treatment description

30 m of Interferon alpha (Snyder)

antibody

c-Jun

antibody antibodydescription

Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

antibody targetdescription

Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-1694

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000655

replicate

1

Sequenced DNA Library

library_name

GSM935521: Stanford_ChipSeq_K562_IFNa30_c-Jun_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

40535201

Reads aligned (%)

85.7

Duplicates removed (%)

23.4

Number of peaks

13586 (qval < 1E-05)

hg19

Number of total reads

40535201

Reads aligned (%)

85.1

Duplicates removed (%)

24.4

Number of peaks

13793 (qval < 1E-05)