Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUN

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
IFNa30
treatment description
30 m of Interferon alpha (Snyder)
antibody
c-Jun
antibody antibodydescription
Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun
antibody targetdescription
Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-1694
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000655
replicate
1

Sequenced DNA Library

library_name
GSM935521: Stanford_ChipSeq_K562_IFNa30_c-Jun_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
40535201
Reads aligned (%)
64.3
Duplicates removed (%)
24.4
Number of peaks
13793 (qval < 1E-05)

hg38

Number of total reads
40535201
Reads aligned (%)
65.6
Duplicates removed (%)
23.4
Number of peaks
13586 (qval < 1E-05)

Base call quality data from DBCLS SRA