SRX150598
GSM935519: Stanford ChipSeq IMR90 CEBPB IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
IMR90
cell organism
human
cell description
fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
endoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
CEBPB
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: CEBPB
antibody targetdescription
epitope mapping at the C-terminus of C/EBP-beta of rat origin
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-150
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH002808
replicate
1

Sequenced DNA Library

library_name
GSM935519: Stanford_ChipSeq_IMR90_CEBPB_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
45586265
Reads aligned (%)
85.9
Duplicates removed (%)
11.0
Number of peaks
120995 (qval < 1E-05)

hg38

Number of total reads
45586265
Reads aligned (%)
87.3
Duplicates removed (%)
10.1
Number of peaks
121395 (qval < 1E-05)

Base call quality data from DBCLS SRA