SRX150591
GSM935512: Stanford ChipSeq IMR90 Input IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
IMR90
cell organism
human
cell description
fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
endoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH002808
replicate
1

Sequenced DNA Library

library_name
GSM935512: Stanford_ChipSeq_IMR90_Input_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66396650
Reads aligned (%)
91.6
Duplicates removed (%)
11.6
Number of peaks
1532 (qval < 1E-05)

hg19

Number of total reads
66396650
Reads aligned (%)
90.8
Duplicates removed (%)
13.3
Number of peaks
1635 (qval < 1E-05)

Base call quality data from DBCLS SRA