Antigen

Antigen Class

TFs and others

Antigen

SMARCA4

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3

biomaterial_provider

ATCC

lab

Yale

lab description

Snyder - Yale University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HeLa-S3

cell organism

human

cell description

cervical carcinoma

cell karyotype

cancer

cell lineage

ectoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

Brg1

antibody antibodydescription

Brg-1 (G-7) is a mouse monoclonal antibody raised against amino acids 209-296 mapping near the N-terminus of Brg-1 of human origin. Antibody Target: BRG1

antibody targetdescription

Brg1 (SMARCA4) is an ATPase subunit of the SWI/SNF chromatin-remodeling complex.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-17796

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000633

labversion

remapped from hg18, Illumina 2.0, low confidence sequences excluded

replicate

1

Sequenced DNA Library

library_name

GSM935511: Yale_ChipSeq_HeLa-S3_Brg1_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

25454467

Reads aligned (%)

91.3

Duplicates removed (%)

5.1

Number of peaks

702 (qval < 1E-05)

hg19

Number of total reads

25454467

Reads aligned (%)

90.7

Duplicates removed (%)

5.7

Number of peaks

679 (qval < 1E-05)