SRX150587
GSM935508: Harvard ChipSeq HeLa-S3 NF-YA IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NFYA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
NF-YA
antibody antibodydescription
Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA
antibody targetdescription
NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif
antibody vendorname
Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy
antibody vendorid
missing
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000744
replicate
1

Sequenced DNA Library

library_name
GSM935508: Harvard_ChipSeq_HeLa-S3_NF-YA_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
32859626
Reads aligned (%)
77.7
Duplicates removed (%)
16.6
Number of peaks
6448 (qval < 1E-05)

hg38

Number of total reads
32859626
Reads aligned (%)
79.8
Duplicates removed (%)
15.1
Number of peaks
6385 (qval < 1E-05)

Base call quality data from DBCLS SRA