Antigen

Antigen Class

TFs and others

Antigen

NFYA

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Harvard

lab description

Struhl - Harvard University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

NF-YA

antibody antibodydescription

Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA

antibody targetdescription

NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

antibody vendorname

Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy

antibody vendorid

missing

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000706

replicate

1

Sequenced DNA Library

library_name

GSM935506: Harvard_ChipSeq_GM12878_NF-YA_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

32926476

Reads aligned (%)

95.1

Duplicates removed (%)

10.4

Number of peaks

2411 (qval < 1E-05)

hg19

Number of total reads

32926476

Reads aligned (%)

94.0

Duplicates removed (%)

12.0

Number of peaks

2668 (qval < 1E-05)