Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NFYA

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
NF-YA
antibody antibodydescription
Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA
antibody targetdescription
NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif
antibody vendorname
Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy
antibody vendorid
missing
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
controlid
wgEncodeEH000706
replicate
1

Sequenced DNA Library

library_name
GSM935506: Harvard_ChipSeq_GM12878_NF-YA_IgG-mus
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
32926476
Reads aligned (%)
82.8
Duplicates removed (%)
12.0
Number of peaks
2668 (qval < 1E-05)

hg38

Number of total reads
32926476
Reads aligned (%)
85.2
Duplicates removed (%)
10.4
Number of peaks
2411 (qval < 1E-05)

Base call quality data from DBCLS SRA