Antigen

Antigen Class

TFs and others

Antigen

STAT1

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

K562

cell organism

human

cell description

leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC

cell karyotype

cancer

cell lineage

mesoderm

cell sex

F

treatment

IFNg6h

treatment description

Interferon gamma treatment - 6 hours (Snyder)

antibody

STAT1

antibody antibodydescription

rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

antibody targetdescription

transcription factor, activated by interferon signalling

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-345

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000658

labversion

low confidence sequences excluded

replicate

1

Sequenced DNA Library

library_name

GSM935488: Stanford_ChipSeq_K562_IFNg6h_STAT1_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

23027869

Reads aligned (%)

79.1

Duplicates removed (%)

1.9

Number of peaks

4290 (qval < 1E-05)

hg19

Number of total reads

23027869

Reads aligned (%)

78.6

Duplicates removed (%)

2.6

Number of peaks

4414 (qval < 1E-05)