Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
IFNg30
treatment description
Interferon gamma treatment - 30 minutes (Snyder)
antibody
STAT1
antibody antibodydescription
rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1
antibody targetdescription
transcription factor, activated by interferon signalling
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-345
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000657
replicate
1

Sequenced DNA Library

library_name
GSM935487: Stanford_ChipSeq_K562_IFNg30_STAT1_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
32904365
Reads aligned (%)
67.5
Duplicates removed (%)
3.2
Number of peaks
3200 (qval < 1E-05)

hg38

Number of total reads
32904365
Reads aligned (%)
68.8
Duplicates removed (%)
2.2
Number of peaks
3099 (qval < 1E-05)

Base call quality data from DBCLS SRA