Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
YY1
antibody antibodydescription
Rabbit polyclonal. Antibody Target: YY1
antibody targetdescription
YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-1703
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000625
labversion
Fragmented using Bioruptor, precipitated with Staph A,
replicate
1
softwareversion
PeakSeq1.0 (fdr 0.001)

Sequenced DNA Library

library_name
GSM935482: USC_ChipSeq_GM12878_YY1_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
55832459
Reads aligned (%)
28.6
Duplicates removed (%)
3.4
Number of peaks
2298 (qval < 1E-05)

hg38

Number of total reads
55832459
Reads aligned (%)
29.4
Duplicates removed (%)
2.0
Number of peaks
2142 (qval < 1E-05)

Base call quality data from DBCLS SRA