Antigen

Antigen Class

TFs and others

Antigen

YY1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

YY1

antibody antibodydescription

Rabbit polyclonal. Antibody Target: YY1

antibody targetdescription

YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-1703

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

labversion

Fragmented using Bioruptor, precipitated with Staph A,

replicate

1

softwareversion

PeakSeq1.0 (fdr 0.001)

Sequenced DNA Library

library_name

GSM935482: USC_ChipSeq_GM12878_YY1_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

55832459

Reads aligned (%)

30.0

Duplicates removed (%)

2.0

Number of peaks

2142 (qval < 1E-05)

hg19

Number of total reads

55832459

Reads aligned (%)

29.6

Duplicates removed (%)

3.4

Number of peaks

2298 (qval < 1E-05)