Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
IFNa30
treatment description
30 m of Interferon alpha (Snyder)
antibody
STAT1
antibody antibodydescription
rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1
antibody targetdescription
transcription factor, activated by interferon signalling
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-345
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000655
labversion
Illumina 2.0, low confidence sequences excluded
replicate
1

Sequenced DNA Library

library_name
GSM935472: Yale_ChipSeq_K562_IFNa30_STAT1_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
40215393
Reads aligned (%)
50.9
Duplicates removed (%)
3.6
Number of peaks
2342 (qval < 1E-05)

hg38

Number of total reads
40215393
Reads aligned (%)
51.9
Duplicates removed (%)
2.7
Number of peaks
2268 (qval < 1E-05)

Base call quality data from DBCLS SRA