Antigen

Antigen Class

TFs and others

Antigen

GATA1

Cell type

Cell type Class

Blood

Cell type

PBDE

Tissue

blood

Lineage

mesoderm

Description

peripheral blood-derived erythroblasts

Sample

source_name

PBDE

biomaterial_provider

Farnham lab

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

PBDE

cell organism

human

cell description

peripheral blood-derived erythroblasts

cell lineage

mesoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

GATA-1

antibody antibodydescription

Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

antibody targetdescription

GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

antibody vendorname

Donated by Dr. E.H. Bresnick, UW Madison

antibody vendorid

GATA-1

control

UCDavis

control description

Input library was prepared at UC Davis.

control

UCDavis

control description

Input library was prepared at UC Davis.

controlid

wgEncodeEH001778

replicate

1

Sequenced DNA Library

library_name

GSM935465: USC_ChipSeq_PBDE_GATA-1_UCDavis

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

43276789

Reads aligned (%)

72.7

Duplicates removed (%)

38.9

Number of peaks

24649 (qval < 1E-05)

hg19

Number of total reads

43276789

Reads aligned (%)

72.3

Duplicates removed (%)

39.5

Number of peaks

24636 (qval < 1E-05)