Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
PBDE
Tissue
blood
Lineage
mesoderm
Description
peripheral blood-derived erythroblasts

Attributes by original data submitter

Sample

source_name
PBDE
biomaterial_provider
Farnham lab
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
PBDE
cell organism
human
cell description
peripheral blood-derived erythroblasts
cell lineage
mesoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA-1
antibody antibodydescription
Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1
antibody targetdescription
GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.
antibody vendorname
Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid
GATA-1
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001778
replicate
1

Sequenced DNA Library

library_name
GSM935465: USC_ChipSeq_PBDE_GATA-1_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
43276789
Reads aligned (%)
43.8
Duplicates removed (%)
39.5
Number of peaks
24636 (qval < 1E-05)

hg38

Number of total reads
43276789
Reads aligned (%)
44.4
Duplicates removed (%)
38.9
Number of peaks
24649 (qval < 1E-05)

Base call quality data from DBCLS SRA