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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTBP2
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150542
GSM935463: USC ChipSeq H1-hESC CtBP2 UCDavis
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTBP2
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
CtBP2
antibody antibodydescription
mouse monoclonal. Antibody Target: CtBP2
antibody targetdescription
C-terminal binding protein 2
antibody vendorname
BD Biosciences
antibody vendorid
612044
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001751
replicate
1
Sequenced DNA Library
library_name
GSM935463: USC_ChipSeq_H1-hESC_CtBP2_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
45960780
Reads aligned (%)
49.3
Duplicates removed (%)
16.9
Number of peaks
8043 (qval < 1E-05)
hg19
Number of total reads
45960780
Reads aligned (%)
49.0
Duplicates removed (%)
17.4
Number of peaks
7877 (qval < 1E-05)
Base call quality data from
DBCLS SRA