Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM19099

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM19099

biomaterial_provider

Coriell

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM19099

cell organism

human

cell description

lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

TNFa

treatment description

human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000778

labversion

remapped from hg18, Illumina 2.0, low confidence sequences excluded

replicate

1

Sequenced DNA Library

library_name

GSM935455: Stanford_ChipSeq_GM19099_TNFa_Input_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

10552700

Reads aligned (%)

91.7

Duplicates removed (%)

1.3

Number of peaks

194 (qval < 1E-05)

hg19

Number of total reads

10552700

Reads aligned (%)

90.6

Duplicates removed (%)

2.1

Number of peaks

423 (qval < 1E-05)