Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12891

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12891

biomaterial_provider

Coriell

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12891

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

M

treatment

TNFa

treatment description

human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000772

labversion

remapped from hg18

replicate

1

Sequenced DNA Library

library_name

GSM935453: Stanford_ChipSeq_GM12891_TNFa_Input_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

29391979

Reads aligned (%)

63.5

Duplicates removed (%)

15.1

Number of peaks

1056 (qval < 1E-05)

hg19

Number of total reads

29391979

Reads aligned (%)

59.9

Duplicates removed (%)

13.3

Number of peaks

1222 (qval < 1E-05)