Antigen

Antigen Class

TFs and others

Antigen

IKZF1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

IKZF1_(IkN)_(UCLA)

antibody antibodydescription

Rabbit polyclonal antibody raised against a recombinant protein encompassing the amino-terminus of the murine IKZF1 protein. Antibody Target: IKZF1

antibody targetdescription

IKAROS family zinc finger 1 (Ikaros or IKZF1) is a C2H2 zinc finger transcription factor that is associated with various chromatin-modifying complexes and is suggested to play a role in the development of lymphocytes, B- and T-cells.

antibody vendorname

From the laboratory of Stephen Smale, UCLA

antibody vendorid

IKZF1_(IkN)

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

replicate

1

Sequenced DNA Library

library_name

GSM935442: USC_ChipSeq_GM12878_IKZF1_(IkN)_(UCLA)_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

54125474

Reads aligned (%)

98.0

Duplicates removed (%)

5.0

Number of peaks

13691 (qval < 1E-05)

hg19

Number of total reads

54125474

Reads aligned (%)

97.2

Duplicates removed (%)

6.1

Number of peaks

14038 (qval < 1E-05)