Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IKZF1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
IKZF1_(IkN)_(UCLA)
antibody antibodydescription
Rabbit polyclonal antibody raised against a recombinant protein encompassing the amino-terminus of the murine IKZF1 protein. Antibody Target: IKZF1
antibody targetdescription
IKAROS family zinc finger 1 (Ikaros or IKZF1) is a C2H2 zinc finger transcription factor that is associated with various chromatin-modifying complexes and is suggested to play a role in the development of lymphocytes, B- and T-cells.
antibody vendorname
From the laboratory of Stephen Smale, UCLA
antibody vendorid
IKZF1_(IkN)
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000625
replicate
1

Sequenced DNA Library

library_name
GSM935442: USC_ChipSeq_GM12878_IKZF1_(IkN)_(UCLA)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
54125474
Reads aligned (%)
91.3
Duplicates removed (%)
6.1
Number of peaks
14038 (qval < 1E-05)

hg38

Number of total reads
54125474
Reads aligned (%)
93.1
Duplicates removed (%)
5.0
Number of peaks
13691 (qval < 1E-05)

Base call quality data from DBCLS SRA