Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MXI1

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
Mxi1_(AF4185)
antibody antibodydescription
Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription
Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname
R&D Systems
antibody vendorid
AF4185
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
HepG2/None/Input/std
replicate
1

Sequenced DNA Library

library_name
GSM935437: Stanford_ChipSeq_HepG2_Mxi1_(AF4185)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
75562615
Reads aligned (%)
91.2
Duplicates removed (%)
5.7
Number of peaks
29796 (qval < 1E-05)

hg38

Number of total reads
75562615
Reads aligned (%)
93.2
Duplicates removed (%)
4.4
Number of peaks
30007 (qval < 1E-05)

Base call quality data from DBCLS SRA