Antigen

Antigen Class

TFs and others

Antigen

BRF2

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3

biomaterial_provider

ATCC

lab

Harvard

lab description

Struhl - Harvard University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HeLa-S3

cell organism

human

cell description

cervical carcinoma

cell karyotype

cancer

cell lineage

ectoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

BRF2

antibody antibodydescription

Antibody 4295 against Brf2 was raised by immunizing rabbits with keyhole limpet hemocyanin coupled to synthetic peptides VSRSQQRGLRRVRDLC and SDSEIEQYLRTPQEVR, corresponding to human Brf2 residues 66-80 and 385-400, respectively. Antibody Target: BRF2

antibody targetdescription

Brf2 is a component of an alternate form of the RNA Polymerase III transcription factor TFIIIB.

antibody vendorname

Donated by Dr. RJ White, The Beatson Institute for Cancer Research

antibody vendorid

4295

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000612

replicate

1

Sequenced DNA Library

library_name

GSM935435: Harvard_ChipSeq_HeLa-S3_BRF2_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

50607581

Reads aligned (%)

77.9

Duplicates removed (%)

7.0

Number of peaks

914 (qval < 1E-05)

hg19

Number of total reads

50607581

Reads aligned (%)

77.1

Duplicates removed (%)

8.7

Number of peaks

1126 (qval < 1E-05)