Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NFYA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
NF-YA
antibody antibodydescription
Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA
antibody targetdescription
NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif
antibody vendorname
Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy
antibody vendorid
missing
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000615
replicate
1

Sequenced DNA Library

library_name
GSM935433: Stanford_ChipSeq_K562_NF-YA_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
38042782
Reads aligned (%)
41.8
Duplicates removed (%)
17.9
Number of peaks
7845 (qval < 1E-05)

hg38

Number of total reads
38042782
Reads aligned (%)
42.6
Duplicates removed (%)
17.0
Number of peaks
7833 (qval < 1E-05)

Base call quality data from DBCLS SRA