Antigen

Antigen Class

TFs and others

Antigen

MXI1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

Mxi1_(AF4185)

antibody antibodydescription

Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

antibody targetdescription

Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

antibody vendorname

R&D Systems

antibody vendorid

AF4185

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000706

replicate

1

Sequenced DNA Library

library_name

GSM935431: Stanford_ChipSeq_GM12878_Mxi1_(AF4185)_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

62627680

Reads aligned (%)

94.1

Duplicates removed (%)

9.6

Number of peaks

21400 (qval < 1E-05)

hg19

Number of total reads

62627680

Reads aligned (%)

93.2

Duplicates removed (%)

10.7

Number of peaks

22087 (qval < 1E-05)