Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
XRCC4

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
XRCC4
antibody antibodydescription
Rabbit polyclonal. Antibody Target: XRCC4
antibody targetdescription
Recognizes the XRCC4 protein (X ray cross complementation protein). XRCC4 is a ubiquitous protein reported to have a role in DNA double-stranded break repair and in V(D)J recombination.
antibody vendorname
Abcam
antibody vendorid
ab145
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000615
labversion
Contains incomplete fastq files
replicate
1

Sequenced DNA Library

library_name
GSM935425: Yale_ChipSeq_K562_XRCC4_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
15397385
Reads aligned (%)
92.6
Duplicates removed (%)
2.3
Number of peaks
677 (qval < 1E-05)

hg38

Number of total reads
15397385
Reads aligned (%)
94.4
Duplicates removed (%)
1.2
Number of peaks
418 (qval < 1E-05)

Base call quality data from DBCLS SRA