Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A-Er-Src
biomaterial_provider
Struhl laboratory
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MCF10A-Er-Src
cell organism
human
cell description
mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)
cell karyotype
normal
cell lineage
ectoderm
cell sex
F
treatment
EtOH_0.01pct_4hr
treatment description
4 h with 0.01% Ethanol (Snyder)
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001870

Sequenced DNA Library

library_name
GSM935418: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_4hr_Input_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
30305817
Reads aligned (%)
89.8
Duplicates removed (%)
4.1
Number of peaks
430 (qval < 1E-05)

hg19

Number of total reads
30305817
Reads aligned (%)
89.0
Duplicates removed (%)
5.1
Number of peaks
579 (qval < 1E-05)

Base call quality data from DBCLS SRA