Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

lab

Yale

lab description

Snyder - Yale University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

Sequenced DNA Library

library_name

GSM935413: Yale_ChipSeq_GM12878_Input_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

13958985

Reads aligned (%)

96.2

Duplicates removed (%)

7.0

Number of peaks

808 (qval < 1E-05)

hg19

Number of total reads

13958985

Reads aligned (%)

91.9

Duplicates removed (%)

5.5

Number of peaks

1110 (qval < 1E-05)