Antigen

Antigen Class

TFs and others

Antigen

FOS

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Yale

lab description

Snyder - Yale University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

c-Fos

antibody antibodydescription

Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

antibody targetdescription

Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-7202

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

replicate

1

Sequenced DNA Library

library_name

GSM935409: Yale_ChipSeq_GM12878_c-Fos_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

16278787

Reads aligned (%)

76.0

Duplicates removed (%)

4.7

Number of peaks

2811 (qval < 1E-05)

hg19

Number of total reads

16278787

Reads aligned (%)

74.0

Duplicates removed (%)

5.0

Number of peaks

3069 (qval < 1E-05)