Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF2B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
GTF2B
antibody antibodydescription
rabbit polyclonal IgG, 200 ?g/ml. epitope mapping near the C-terminus of TFIIB of human origin. Antibody Target: GTF2B
antibody targetdescription
DNA- binding general transcription factor
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-225
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000615
labversion
remapped from hg18
replicate
1

Sequenced DNA Library

library_name
GSM935394: Harvard_ChipSeq_K562_GTF2B_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
16833014
Reads aligned (%)
66.3
Duplicates removed (%)
4.8
Number of peaks
2339 (qval < 1E-05)

hg38

Number of total reads
16833014
Reads aligned (%)
67.5
Duplicates removed (%)
3.9
Number of peaks
2327 (qval < 1E-05)

Base call quality data from DBCLS SRA