SRX150473
GSM935393: Stanford ChipSeq HUVEC Pol2 std

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HUVEC
cell organism
human
cell description
umbilical vein endothelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
Pol2
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000780
replicate
1

Sequenced DNA Library

library_name
GSM935393: Stanford_ChipSeq_HUVEC_Pol2_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50298885
Reads aligned (%)
63.0
Duplicates removed (%)
6.6
Number of peaks
14542 (qval < 1E-05)

hg19

Number of total reads
50298885
Reads aligned (%)
62.1
Duplicates removed (%)
7.2
Number of peaks
14639 (qval < 1E-05)

Base call quality data from DBCLS SRA