SRX150461
GSM935381: Stanford ChipSeq H1-hESC Input IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001834

Sequenced DNA Library

library_name
GSM935381: Stanford_ChipSeq_H1-hESC_Input_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
56869795
Reads aligned (%)
86.4
Duplicates removed (%)
13.6
Number of peaks
1337 (qval < 1E-05)

hg19

Number of total reads
56869795
Reads aligned (%)
85.8
Duplicates removed (%)
15.0
Number of peaks
1444 (qval < 1E-05)

Base call quality data from DBCLS SRA