Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USF2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
USF2
antibody antibodydescription
Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2
antibody targetdescription
Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').
antibody vendorname
abcam
antibody vendorid
ab60931
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001834
replicate
1

Sequenced DNA Library

library_name
GSM935380: Stanford_ChipSeq_H1-hESC_USF2_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
76013817
Reads aligned (%)
84.6
Duplicates removed (%)
6.1
Number of peaks
8951 (qval < 1E-05)

hg38

Number of total reads
76013817
Reads aligned (%)
86.5
Duplicates removed (%)
4.7
Number of peaks
9191 (qval < 1E-05)

Base call quality data from DBCLS SRA