Antigen

Antigen Class

TFs and others

Antigen

EBF1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

EBF1_(SC-137065)

antibody antibodydescription

Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1

antibody targetdescription

Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-137065

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

replicate

1

Sequenced DNA Library

library_name

GSM935375: Stanford_ChipSeq_GM12878_EBF1_(SC-137065)_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

72532991

Reads aligned (%)

86.5

Duplicates removed (%)

12.1

Number of peaks

52394 (qval < 1E-05)

hg19

Number of total reads

72532991

Reads aligned (%)

85.7

Duplicates removed (%)

13.2

Number of peaks

53864 (qval < 1E-05)