Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EBF1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
EBF1_(SC-137065)
antibody antibodydescription
Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1
antibody targetdescription
Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-137065
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000625
replicate
1

Sequenced DNA Library

library_name
GSM935375: Stanford_ChipSeq_GM12878_EBF1_(SC-137065)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
72532991
Reads aligned (%)
74.4
Duplicates removed (%)
13.2
Number of peaks
53864 (qval < 1E-05)

hg38

Number of total reads
72532991
Reads aligned (%)
76.0
Duplicates removed (%)
12.1
Number of peaks
52394 (qval < 1E-05)

Base call quality data from DBCLS SRA