SRX150445
GSM935365: USC ChipSeq HeLa-S3 E2F4 std

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2F4

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
E2F4
antibody antibodydescription
rabbit polyclonal. Antibody Target: E2F4
antibody targetdescription
mapping at the C-terminus of E2F4 of human origin
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-866
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000612
labversion
Fragmented using Bioruptor, precipitated with StaphA
replicate
1
softwareversion
PeakSeq1.0 (fdr 0.001)

Sequenced DNA Library

library_name
GSM935365: USC_ChipSeq_HeLa-S3_E2F4_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49303755
Reads aligned (%)
53.1
Duplicates removed (%)
2.0
Number of peaks
4912 (qval < 1E-05)

hg19

Number of total reads
49303755
Reads aligned (%)
52.7
Duplicates removed (%)
2.7
Number of peaks
4898 (qval < 1E-05)

Base call quality data from DBCLS SRA