Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZKSCAN1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ZKSCAN1_(HPA006672)
antibody antibodydescription
Rabbit polyclonal, Immunogen: Zinc finger with KRAB and SCAN domain-containing protein 1 recombinant protein epitope signature tag (PrEST). Antibody Target: ZKSCAN1
antibody targetdescription
The ZKSCAN1 gene encodes a transcriptional regulator of the KRAB (Kruppel-associated box) subfamily of zinc finger proteins, which contain repeated Cys2-His2 (C2H2) zinc finger domains that are connected by conserved sequences, called H/C links. Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both normal and abnormal cellular proliferation and differentiation.
antibody vendorname
Sigma-Aldrich
antibody vendorid
HPA006672
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000744
replicate
1

Sequenced DNA Library

library_name
GSM935362: Stanford_ChipSeq_HeLa-S3_ZKSCAN1_(HPA006672)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
47444262
Reads aligned (%)
92.0
Duplicates removed (%)
5.7
Number of peaks
6047 (qval < 1E-05)

hg38

Number of total reads
47444262
Reads aligned (%)
94.1
Duplicates removed (%)
4.3
Number of peaks
6345 (qval < 1E-05)

Base call quality data from DBCLS SRA