SRX150440
GSM935360: Yale ChipSeq HeLa-S3 IFNg30 STAT1 std

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
IFNg30
treatment description
Interferon gamma treatment - 30 minutes (Snyder)
antibody
STAT1
antibody antibodydescription
rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1
antibody targetdescription
transcription factor, activated by interferon signalling
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-345
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000611
labversion
remapped from hg18
replicate
1

Sequenced DNA Library

library_name
GSM935360: Yale_ChipSeq_HeLa-S3_IFNg30_STAT1_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
38321554
Reads aligned (%)
57.2
Duplicates removed (%)
5.7
Number of peaks
26082 (qval < 1E-05)

hg38

Number of total reads
38321554
Reads aligned (%)
57.6
Duplicates removed (%)
5.3
Number of peaks
26087 (qval < 1E-05)

Base call quality data from DBCLS SRA