Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USF2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
USF2
antibody antibodydescription
Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2
antibody targetdescription
Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').
antibody vendorname
abcam
antibody vendorid
ab60931
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
replicate
1

Sequenced DNA Library

library_name
GSM935356: Stanford_ChipSeq_K562_USF2_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
49630901
Reads aligned (%)
85.0
Duplicates removed (%)
2.3
Number of peaks
3462 (qval < 1E-05)

hg19

Number of total reads
49630901
Reads aligned (%)
84.3
Duplicates removed (%)
3.9
Number of peaks
3569 (qval < 1E-05)

Base call quality data from DBCLS SRA