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For hg38
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: NB-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150434
GSM935354: Yale ChipSeq NB4 Pol2 std
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
NB4
biomaterial_provider
Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
NB4
cell organism
human
cell description
acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype
cancer
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
Pol2
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000617
replicate
1
Sequenced DNA Library
library_name
GSM935354: Yale_ChipSeq_NB4_Pol2_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
18011814
Reads aligned (%)
88.9
Duplicates removed (%)
13.5
Number of peaks
20629 (qval < 1E-05)
hg19
Number of total reads
18011814
Reads aligned (%)
88.2
Duplicates removed (%)
13.6
Number of peaks
20629 (qval < 1E-05)
Base call quality data from
DBCLS SRA