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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SUZ12
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150432
GSM935352: USC ChipSeq H1-hESC SUZ12 UCDavis
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SUZ12
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
SUZ12
antibody antibodydescription
rabbit polyclonal. Antibody Target: SUZ12
antibody targetdescription
Suppressor of zeste 12 homolog, Polycomb group (PcG) protein, Component of the PRC2/EED-EZH2 complex
antibody vendorname
Antibody made by Farnham lab
antibody vendorid
SUZ12
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001751
replicate
1
Sequenced DNA Library
library_name
GSM935352: USC_ChipSeq_H1-hESC_SUZ12_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
45056042
Reads aligned (%)
66.0
Duplicates removed (%)
6.3
Number of peaks
1196 (qval < 1E-05)
hg19
Number of total reads
45056042
Reads aligned (%)
65.3
Duplicates removed (%)
7.5
Number of peaks
1134 (qval < 1E-05)
Base call quality data from
DBCLS SRA