Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HUVEC
cell organism
human
cell description
umbilical vein endothelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA-2
antibody antibodydescription
Rabbit polyclonal. Antibody Target: GATA2
antibody targetdescription
GATA binding protein 2
antibody vendorname
Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid
GATA-2
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001759
replicate
1

Sequenced DNA Library

library_name
GSM935347: USC_ChipSeq_HUVEC_GATA-2_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
70436128
Reads aligned (%)
52.8
Duplicates removed (%)
26.3
Number of peaks
27279 (qval < 1E-05)

hg38

Number of total reads
70436128
Reads aligned (%)
54.1
Duplicates removed (%)
25.2
Number of peaks
27367 (qval < 1E-05)

Base call quality data from DBCLS SRA