Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF3C1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TFIIIC-110
antibody antibodydescription
rabbit polyclonal. Antibody Target: TFIIIC-110
antibody targetdescription
TFIIIC-110 is a subunit of the RNA Polymerase III transcription factor TFIIIC. Antiserum 4286 was raised by immunizing rabbits with synthetic peptide RPGFSPTSHRLLPTP (human TFIIIC110 residues 897 to 911) coupled to keyhole limpet hemocyanin.
antibody vendorname
Dr. Robert J. White, Beatson Institute for Cancer Research, UK
antibody vendorid
4286
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000615
labversion
remapped from hg18, Illumina 2.0, low confidence sequences excluded
replicate
1

Sequenced DNA Library

library_name
GSM935343: Harvard_ChipSeq_K562_TFIIIC-110_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
19694334
Reads aligned (%)
55.1
Duplicates removed (%)
12.4
Number of peaks
4234 (qval < 1E-05)

hg19

Number of total reads
19694334
Reads aligned (%)
54.9
Duplicates removed (%)
12.8
Number of peaks
4256 (qval < 1E-05)

Base call quality data from DBCLS SRA