Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Harvard
lab description
Struhl - Harvard University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ATF1_(06-325)
antibody antibodydescription
Sheep polyclonal, immunogen: CPVTLTSQTTKTDDPQL. Antibody Target: ATF1
antibody targetdescription
ATF1 is a bZip transcription factor from the CREB family. ATF1 binds to both cAMP response elements (TGACGTCA).
antibody vendorname
Millipore
antibody vendorid
06-325
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000615
replicate
1

Sequenced DNA Library

library_name
GSM935340: Harvard_ChipSeq_K562_ATF1_(06-325)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
67204862
Reads aligned (%)
76.8
Duplicates removed (%)
16.4
Number of peaks
23635 (qval < 1E-05)

hg38

Number of total reads
67204862
Reads aligned (%)
78.6
Duplicates removed (%)
15.1
Number of peaks
23803 (qval < 1E-05)

Base call quality data from DBCLS SRA