Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID3A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ARID3A_(sc-8821)
antibody antibodydescription
affinity purified goat polyclonal antibody raised against a peptide mapping at the N-terminus of ARID3A of human origin. Antibody Target: ARID3A
antibody targetdescription
This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-8821
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
replicate
1

Sequenced DNA Library

library_name
GSM935336: Stanford_ChipSeq_K562_ARID3A_(sc-8821)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
43276130
Reads aligned (%)
86.6
Duplicates removed (%)
8.2
Number of peaks
11999 (qval < 1E-05)

hg38

Number of total reads
43276130
Reads aligned (%)
88.1
Duplicates removed (%)
7.2
Number of peaks
12050 (qval < 1E-05)

Base call quality data from DBCLS SRA