SRX150400
GSM935320: Yale ChipSeq HeLa-S3 c-Myc std

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
c-Myc
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000612
labversion
Contains incomplete fastq files
replicate
1

Sequenced DNA Library

library_name
GSM935320: Yale_ChipSeq_HeLa-S3_c-Myc_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
19004477
Reads aligned (%)
77.3
Duplicates removed (%)
6.9
Number of peaks
26186 (qval < 1E-05)

hg38

Number of total reads
19004477
Reads aligned (%)
78.2
Duplicates removed (%)
6.3
Number of peaks
26069 (qval < 1E-05)

Base call quality data from DBCLS SRA