Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOS

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
c-Fos
antibody antibodydescription
Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos
antibody targetdescription
Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-7202
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000612
labversion
Contains incomplete fastq files
replicate
1

Sequenced DNA Library

library_name
GSM935317: Yale_ChipSeq_HeLa-S3_c-Fos_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
13462568
Reads aligned (%)
82.3
Duplicates removed (%)
6.0
Number of peaks
17022 (qval < 1E-05)

hg38

Number of total reads
13462568
Reads aligned (%)
83.2
Duplicates removed (%)
5.5
Number of peaks
17003 (qval < 1E-05)

Base call quality data from DBCLS SRA